/*-------------------------------------------------------------

Copyright (C) 2000 Peter Clote. 
All Rights Reserved.

Permission to use, copy, modify, and distribute this
software and its documentation for NON-COMMERCIAL purposes
and without fee is hereby granted provided that this
copyright notice appears in all copies.


THE AUTHOR AND PUBLISHER MAKE NO REPRESENTATIONS OR
WARRANTIES ABOUT THE SUITABILITY OF THE SOFTWARE, EITHER
EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE
IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A
PARTICULAR PURPOSE, OR NON-INFRINGEMENT. THE AUTHORS
AND PUBLISHER SHALL NOT BE LIABLE FOR ANY DAMAGES SUFFERED
BY LICENSEE AS A RESULT OF USING, MODIFYING OR DISTRIBUTING
THIS SOFTWARE OR ITS DERIVATIVES.

-------------------------------------------------------------*/


The following data was generated by S. Will using genemic
sequencing information from TIGR.

All logarithms are base 2.


> Methanococcus_jannaschii_1070_main 7/6/99
> Methanococcus_jannaschii_1069_ECL 7/6/99
> Methanococcus_jannaschii_1063_ECS 7/6/99
mononucleotide frequencies:
 G     A     T     C    
0.157 0.344 0.343 0.155 

dinucleotide frequencies:
   G     A     T     C  
G 0.034 0.057 0.039 0.027 
A 0.060 0.134 0.111 0.039 
T 0.055 0.098 0.134 0.056 
C 0.008 0.055 0.059 0.033 

Mononucleotide entropy: 1.896527
Dinucleotide entropy:   3.763407

relative abundancies:
   G     A     T     C  
G 1.389 1.051 0.714 1.123 
A 1.103 1.131 0.944 0.728 
T 1.027 0.830 1.137 1.047 
C 0.320 1.033 1.109 1.375 


> Thermotoga_maritima_2553__main_molecule 5/27/99
mononucleotide frequencies:
 G     A     T     C    
0.235 0.270 0.268 0.228 

dinucleotide frequencies:
   G     A     T     C  
G 0.055 0.088 0.055 0.037 
A 0.070 0.086 0.060 0.054 
T 0.061 0.036 0.085 0.086 
C 0.049 0.059 0.068 0.051 

Mononucleotide entropy:	1.995849
Dinucleotide entropy:	3.950518

relative abundancies:
   G     A     T     C  
G 0.999 1.396 0.867 0.688 
A 1.099 1.186 0.833 0.875 
T 0.968 0.497 1.186 1.409 
C 0.921 0.963 1.116 0.989 


> Borrelia_burgdorferi_3615_main 7/12/99
> Borrelia_burgdorferi_4091_cp26(plasmid_B) 7/12/99
> Borrelia_burgdorferi_4093_cp32-1(plasmid_P) 7/12/99
> Borrelia_burgdorferi_4087_cp32-3(plasmid_S) 7/12/99
> Borrelia_burgdorferi_4083_cp32-4(plasmid_R) 7/12/99
> Borrelia_burgdorferi_4084_cp32-6(plasmid_M) 7/12/99
> Borrelia_burgdorferi_4085_cp32-7(plasmid_O) 7/12/99
> Borrelia_burgdorferi_4080_cp32-8(plasmid_L) 7/12/99
> Borrelia_burgdorferi_4092_cp32-9(plasmid_N) 7/12/99
> Borrelia_burgdorferi_4041_cp9(plasmid_C) 7/12/99
> Borrelia_burgdorferi_4076_lp17(plasmid_D) 7/12/99
> Borrelia_burgdorferi_4089_lp21(plasmid_U) 7/12/99
> Borrelia_burgdorferi_4005_lp25(plasmid_E) 7/12/99
> Borrelia_burgdorferi_4013_lp28-1(plasmid_F) 7/12/99
> Borrelia_burgdorferi_4006_lp28-2(plasmid_G) 7/12/99
> Borrelia_burgdorferi_4004_lp28-3(plasmid_H) 7/12/99
> Borrelia_burgdorferi_4009_lp28-4(plasmid_I) 7/12/99
> Borrelia_burgdorferi_4008_lp36(plasmid_K) 7/12/99
> Borrelia_burgdorferi_4007_lp38(plasmid_J) 7/12/99
> Borrelia_burgdorferi_4077_lp5(plasmid_T) 7/12/99
> Borrelia_burgdorferi_4075_lp54(plasmid_A) 7/12/99
> Borrelia_burgdorferi_4082_lp56(plasmid_Q) 7/12/99
mononucleotide frequencies:
 G     A     T     C    
0.144 0.364 0.354 0.138 

dinucleotide frequencies:
   G     A     T     C  
G 0.026 0.052 0.037 0.029 
A 0.057 0.158 0.113 0.037 
T 0.051 0.103 0.152 0.048 
C 0.010 0.051 0.053 0.024 

Mononucleotide entropy:	1.857571
Dinucleotide entropy:	3.687066

relative abundancies:
   G     A     T     C  
G 1.245 0.994 0.719 1.480 
A 1.080 1.191 0.874 0.736 
T 1.011 0.798 1.214 0.974 
C 0.508 1.018 1.078 1.263 


> Haemophilus_influenzae_6824_main
mononucleotide frequencies:
 G     A     T     C    
0.190 0.310 0.308 0.192 

dinucleotide frequencies:
   G     A     T     C  
G 0.036 0.051 0.050 0.052 
A 0.048 0.120 0.091 0.051 
T 0.066 0.072 0.119 0.052 
C 0.040 0.066 0.048 0.037 

Mononucleotide entropy:	1.959092
Dinucleotide entropy:	3.893445

relative abundancies:
   G     A     T     C  
G 1.007 0.874 0.852 1.435 
A 0.821 1.249 0.953 0.850 
T 1.120 0.754 1.250 0.876 
C 1.089 1.118 0.819 1.012 


> Helicobacter_pylori_813_main
mononucleotide frequencies:
 G     A     T     C    
0.193 0.303 0.308 0.196 

dinucleotide frequencies:
   G     A     T     C  
G 0.044 0.050 0.039 0.059 
A 0.056 0.126 0.080 0.040 
T 0.057 0.068 0.129 0.053 
C 0.035 0.058 0.059 0.044 

Mononucleotide entropy:	1.963930
Dinucleotide entropy:	3.883369

relative abundancies:
   G     A     T     C  
G 1.179 0.864 0.664 1.562 
A 0.967 1.376 0.861 0.670 
T 0.965 0.733 1.363 0.876 
C 0.931 0.971 0.975 1.152